NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10000010

Scaffold Ga0307476_10000010


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000010 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)373557
Total Scaffold Genes334 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)275 (82.34%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000036Metagenome / Metatranscriptome4352Y
F000391Metagenome / Metatranscriptome1196Y
F000515Metagenome / Metatranscriptome1062Y
F001520Metagenome / Metatranscriptome679Y
F002979Metagenome / Metatranscriptome516Y
F014777Metagenome / Metatranscriptome260Y
F042436Metagenome / Metatranscriptome158N
F056005Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_10000010121F000515N/AMTHFPQPHPSRRAARVQLGESVLAAIRLEDGRRAKAKLQTISATGGLLNLPQSLGQGDFVEVAFQTQAGPVHGMAEVLSPMRKTLDGVLQPFRFVALEDEDHRRLRTTLEHVAERSVLGIRTSAFS
Ga0307476_10000010204F002979GGAVKRQATSRINKSSKDTKSESLLRMFLVPCSCGTTFAVAENYDHQGTAWSRYLTCPECGKKHDPKNRLLQMGFHPEGYWKVDEC
Ga0307476_10000010236F000036AGGMAYKEIFWMACDSTEQLRAEYGPFHARSEAECEARKLGFGYLLRYEHILDANDEIEEVRCIFIELPGATPAGAEALAVTLHTRCATCGESSAHDSGWQAEVWADIHEFEHSRHRVRLFEHARGKGLKEICDWRG
Ga0307476_10000010291F001520GGAGMNGIKFLFAAYIAVWVIHAFYLGTLVRRFSSLRQQLRELGKGK
Ga0307476_1000001030F000391GAGGMTPETQQSESPYCVRIETDTGQSSTVPIAVLTPNQLELFLQSEFKRLAQEAGVKGARIHVERAIAADYDQVLREVAACLFSAKARAA
Ga0307476_10000010324F042436N/AMINENEKGREHDLRQRIVSLIRANEQALKKPIANEEVQKLKAAAARLDQMLKAAVDADGQVLRSAAARLEQLLEDIATGKDVTYDLKRRRNWQKREDG
Ga0307476_1000001035F056005GGAGMTCDKYENALLLAAASNGELDAKLARHLERCSTCRMTLRSERELFSRIDSALRAQVNEDPRPGFLAQLRLQLSKELTARPGSNRAWHVAGAALALVLVAMFYPLVHARPSSVQGNLQTPTIRVPQSAEVRKSARASGDLGVRSRHHSKRSAVQSAVPQEPEVLVPQDEQKAFAQFVACVARRDSEAQAVVMPAANKTVNRNTELPQVSFVDIAGLQLARARQEEWINQNVSSE
Ga0307476_1000001043F014777GAGGMSAVTKLLIRILGTSLALCVIAHAQCPVDTAIVKGRVAENASAHSKVRVQLVYPKEKPGESGEVTVEDGAFQIPIEFVTMQSSIFTNLPKRCGRKPKTVVITLLENDQESDQVFLDFAKNFKMADASAYTLRSEVVLNGPR
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