NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10000029

Scaffold Ga0307476_10000029


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000029 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)155741
Total Scaffold Genes146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)107 (73.29%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000655Metagenome / Metatranscriptome958Y
F001701Metagenome / Metatranscriptome649Y
F002248Metagenome / Metatranscriptome578Y
F008761Metagenome / Metatranscriptome328Y
F009817Metagenome / Metatranscriptome312Y
F021069Metagenome / Metatranscriptome220Y
F025076Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_10000029121F001701GGAGMNSKGFLYAAYIATWLIHGLYIGVLARGYSRLRQQLKDLNKSGK
Ga0307476_1000002913F008761N/AMPKRNDLKSLRNLISEAQTLLMTTNLPEGRSQRANELLTAAVRLADDLLEQSPAATLGAKGGKATAKRGSDYFRKIAAMRKERKGGRPPKDVQ
Ga0307476_10000029145F021069GAGMSMAVNWIEFAQKMAQAARAGVAIERKRLQEILAERQRKQQSQSSSSSR
Ga0307476_1000002925F009817AGGMNWIRTIQPKAAIVLVVLGLCHVAVCQQVSAALLHPSMIEAPSFEPAPVRLAPVTLPESPVQHRFLDRENSLLFATSAAFSAADFVVTRDNLRSGGRELNPITSWFTGSTAGLAVNFAGETAGVVGLSYLFHKTGHHKMERAVSMLNIGASAGAVAFDLAHR
Ga0307476_1000002927F025076AGGAGGMDRSARLHLVARIMYYVGWLTLLCGGLVHLNIARTLFMAMSLTKRNLFEVSVTCFVICMASEIRVLASSRKGSAAS
Ga0307476_1000002979F002248AGGAGMDRRQQSRVFVDLPVHIWGMDANSRPFTQPASLRTISGRGATLQCVDARLKPGDVVDVLYEGTKAQFRIVWCGKPGTEMAGEVGVENLSVDTRFWDIDPLRCAAAVGQG
Ga0307476_1000002996F000655N/AMIWWFLILGVSTLVVVCVAIAVYIRLRRHLREAQAAREGSSGEVGGEHQPGDIEH
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