Basic Information | |
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Taxon OID | 3300031715 Open in IMG/M |
Scaffold ID | Ga0307476_10000063 Open in IMG/M |
Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 111566 |
Total Scaffold Genes | 108 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 75 (69.44%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indiana | |||||||
Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000072 | Metagenome / Metatranscriptome | 2651 | Y |
F000530 | Metagenome / Metatranscriptome | 1047 | Y |
F045632 | Metagenome / Metatranscriptome | 152 | Y |
F102977 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307476_1000006350 | F102977 | N/A | MQAWQIFAVGVAVLVAALLLPSYEPMLAGLAALAMVTVVVTGFLFRPRKDVFYLRTTLIVSEPDYPISVEHDRIAVRVELARLWLLFLPTFGALAFLIVTFAKGSTWSFSLLDRFWELGSYPIFLGIRGFLVVVVGLLSAWVSERWVLRDAEACSADSISSTGGRLLYSFKDRIGEYYGGEAFPFALVRSPKLARIVFYRPAKPELNKIAMGCLFHRPVIIGRGVTDLDEATVSAHSAKVQPAAQWF |
Ga0307476_1000006355 | F000072 | GAG | MDVERIIDDIEQLQEMFEAPDIRPLSASDISAANRRHDEMLAYSPWFRLWQHYGVCCRTEAPIIQLPE |
Ga0307476_1000006363 | F045632 | N/A | MPARRLRIVKTSPPPAIGVCERCDAQFKSNLPNSTAEIKALFLVHKCKPMDTSQNALRIVRESTDGK |
Ga0307476_1000006371 | F000530 | N/A | MDEQAESTAPELSGEEHKVVVTRPFRVKLRGSVLVLLRLPNRRDVRGAIHQLSVTGGVVHLERSLDEKIEVDLIFHIQGATIREKAQMLFPMWATQGWMQPFRFVNLSDASRETLDLHLKSIIGETAKGAAAGA |
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