NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10000371

Scaffold Ga0307476_10000371


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000371 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37098
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (65.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026629Metagenome197Y
F043510Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_1000037111F043510AGGAGMKRKGQPMSESREIRLPADLCAAAEEKFGGSFRSLDELVTFLLEDLIRKDTIDLDRADQAVVEERLRDLGYI
Ga0307476_1000037118F026629N/AMKILLIHPEDDPEKGPWENLPWDRIIDLGLGGLATYERWTRRFHCPITTLDSLRDDFDVFRQVRDVLGLGCNRLVDRHGLDWWELMSILLQPEMQTLILLQRFLSTVTSGSEVYISRPGLHARLLQCLLPLRVTVFPLRRGARKGSLAHYLRVSKKLSTLQMVDVFWDKYDSGYQFRGRLVKKRRASKQPAVLLPTAYVNVSRTGLAYARTFPEENFFLVATRRSGWVDDPPRNVTTAWLSSYASVQDRSKEYQEIENGWRSLLKEFEEAAEFEILDRAGYMDCFPERLRRGVEVRDAWRNVLDTEPVQAVLCADDSNPYTRIPLLLAQARGLPNIACHHGALDSRYIFKRALGDVVWVKGKMEEDYLVGRCGVPPEKVEVAAPALPPNWREFEHSNREEFRPYLLFISEAAEVSGGRSEEFYRDTLPPLADLALATGRELIVKLHPAESKSERSAALARILSPRQNTATRMVSGPLSEHLLEKTWFGITILSTVAIECAVRGIPCFLCKWLEFWPYGYVEQFLRFGVGIGLNDPGEIEKIPEHLRKHRVSAEVRENCWQPAAAGRLRELLASSRKECTMTVR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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