NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10000847

Scaffold Ga0307476_10000847


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000847 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20771
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000612Metagenome / Metatranscriptome985Y
F003165Metagenome / Metatranscriptome504Y
F026939Metagenome / Metatranscriptome196Y
F080279Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_1000084710F080279GGAGMPIFDFFLAALSLAPVGLFLLFWRIFPRDRGIHPIYRESGTETRGERTESQDVTARRLHMKEVGRKCKIA
Ga0307476_1000084720F000612GAGMKDLPIIDQPRWPAMDAETTPAFLDFKLVFKATDEPVKYEDATRQYRFTGFKANAELETTVRMPSIDFVFKTDPLENSTCDFAVMGEEVNGKYYP
Ga0307476_100008476F003165AGGAGGMAKVIEFYVPKNFRKPLKWASALQCGTIIEFCSPTKKSA
Ga0307476_100008478F026939GGAGGMTPQTSQTDTNLQAELDRLTYSAYLLTLDPGKAFSAVERAIDGSLEETTVHSDLLERTVELALEDILCESRTSWDGESSAYDVVLYGHSQAINSKAFQSLQDLNGSPILLLDATSRIVFVLHHLLGYEIGDAAAKARLTEKQYRAQLRRAYVQLASFRLQDGTLASHGAEQSAPTWERKYELVEMDSCLLV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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