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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031715 Open in IMG/M |
| Scaffold ID | Ga0307476_10001130 Open in IMG/M |
| Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16835 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (77.78%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004246 | Metagenome / Metatranscriptome | 447 | Y |
| F011101 | Metagenome / Metatranscriptome | 295 | Y |
| F015646 | Metagenome / Metatranscriptome | 253 | Y |
| F095814 | Metagenome / Metatranscriptome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307476_1000113013 | F015646 | AGAAGG | MKTSYFKAVLSLTCLLGFGGNAYAARDNARSVEIFDVVQIGNTELKPGNYKVEWQGTGTAVQVSFQQNGKTVVTVPGTLKMNDDQVTQDATATEATSAGTSTLKEIDFRHLKKALVFDRNPAGI |
| Ga0307476_1000113014 | F095814 | GGAGG | MLESAVELLGGLLLSAVILLAGACILGSIYAALRAVSRESDGEREEVKETFDFGAEVTVLDDRMIKTGAIVMTSPEKHYGL |
| Ga0307476_1000113015 | F011101 | GGA | MQHRAITFASAAFFITSLALASDTWILDSSRSNARLFQGSIANSGSVNIGVARVTGKVKLDANDLDASFFDLSIHPADENWAHLLSPEGALPTGYLPDATDQTLLTFKSTRILRTETGKLEVIGDLTLTRVERTVTTAATEAYAGPVYGDPVIHNETREITFLFPSVSAARLSESLTPAVQQKKGVLEVVGGARVDREQFPELLSAIKETNWPPVVQNKDCHMPSTVREDYSGAVCSGTVIAAIGDNNSQLPASVGEDYSGTQCTPATGDQTTIVIDLKFLHTVPEPSVGMLLESAETR |
| Ga0307476_100011309 | F004246 | GGAGG | MLDDWDERDEVVAAGSICPVPDCCALVISYRPPDRAGRDNAKSWCEFACTRCGTVFTVPEDELIFQSVPKEWLLARVQTA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |