NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10001130

Scaffold Ga0307476_10001130


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10001130 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16835
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004246Metagenome / Metatranscriptome447Y
F011101Metagenome / Metatranscriptome295Y
F015646Metagenome / Metatranscriptome253Y
F095814Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_1000113013F015646AGAAGGMKTSYFKAVLSLTCLLGFGGNAYAARDNARSVEIFDVVQIGNTELKPGNYKVEWQGTGTAVQVSFQQNGKTVVTVPGTLKMNDDQVTQDATATEATSAGTSTLKEIDFRHLKKALVFDRNPAGI
Ga0307476_1000113014F095814GGAGGMLESAVELLGGLLLSAVILLAGACILGSIYAALRAVSRESDGEREEVKETFDFGAEVTVLDDRMIKTGAIVMTSPEKHYGL
Ga0307476_1000113015F011101GGAMQHRAITFASAAFFITSLALASDTWILDSSRSNARLFQGSIANSGSVNIGVARVTGKVKLDANDLDASFFDLSIHPADENWAHLLSPEGALPTGYLPDATDQTLLTFKSTRILRTETGKLEVIGDLTLTRVERTVTTAATEAYAGPVYGDPVIHNETREITFLFPSVSAARLSESLTPAVQQKKGVLEVVGGARVDREQFPELLSAIKETNWPPVVQNKDCHMPSTVREDYSGAVCSGTVIAAIGDNNSQLPASVGEDYSGTQCTPATGDQTTIVIDLKFLHTVPEPSVGMLLESAETR
Ga0307476_100011309F004246GGAGGMLDDWDERDEVVAAGSICPVPDCCALVISYRPPDRAGRDNAKSWCEFACTRCGTVFTVPEDELIFQSVPKEWLLARVQTA

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