NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10001642

Scaffold Ga0307476_10001642


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10001642 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13577
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012707Metagenome / Metatranscriptome278Y
F019003Metagenome / Metatranscriptome232Y
F031438Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_100016422F012707AGGAGMKQLSRLLLCVVLAGLTTAWAIAQDSDTNAKAKGEVRSITGCLTRGPSANEFLLTASDGSSWEVHNNNAIDLVSHVGHTVKAKGVVSHSKMHNMKEDAKDVVKDAGMKNNTTEHGHLKVTDVRMVSDSCQQ
Ga0307476_1000164221F019003AGGAVAGNLQVISVAGGMLRLSQPLDPNTQASLMFLSDGGPVLGKAEMLSPLSRTQQAFRFLALDQKYQRNLQLGIQSHLNQSSDEDRWIAKYRSAIIHKAPSQRGSLKIVFGSVAFGILVLVSVAYFFHFEFLK
Ga0307476_100016428F031438GGAGMAFLRYRHVFIVLLLATLAGCSQQQSSQDLKEQTAQATADVKRDAKAVAAGISEGWSRDKQLDLNTATKDQFKPCRA
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