NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310813_10381263

Scaffold Ga0310813_10381263


Overview

Basic Information
Taxon OID3300031716 Open in IMG/M
Scaffold IDGa0310813_10381263 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1209
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026389Metagenome / Metatranscriptome198Y
F029879Metagenome / Metatranscriptome187Y
F057229Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0310813_103812631F057229AGGAMNRKWKRSLDRVLQEGEMFGLVFVALMLIAIEGCLVYWLHHLQFPERPVSPLGFLVMPPWYQKPRFEVTLLLTIAAGTLFSACRGLCHVWRERDRAASVEIIQSLRRRLTTAASVAALAGFNLAIATWLR
Ga0310813_103812632F029879N/AMLEDWTLSEAQLLERLRKRSAIFADIVVEQPVMLQDVDMEFRAARGKRADLGLLNHTLNLFLEPRNPFEPQRMRKPKMEATVFGTLLALVVIALLSFNLAAPRP
Ga0310813_103812633F026389N/AHQKVEIIVEDVYRKDGRVFLRYAISNGGRTVYLPAAPAVFTLRSPRAPQSLITLANRQLADDIQLRWNGEAAVPVVHAELQAPVVRPGQTAHGLVAFDLPSQSNQPGGRTVVKLRFPEDGVNSVSAVLVL
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