NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307474_10000139

Scaffold Ga0307474_10000139


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10000139 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53106
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (70.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005890Metagenome / Metatranscriptome387Y
F051804Metagenome / Metatranscriptome143Y
F069867Metagenome123Y
F102903Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0307474_100001393F005890GAGGMSFHATNPASFSYLSSCAVESANKSLSTRNYGGELRPSYGGTCPSNRTAIAVNFRSQCADDNLALERVCRYVSRLLLGHSFGAFPAPGGTRSSASHNAPLRGLGSSQNKFENHGKERLSNFFRAPPRKQTFGTWEPGPLAKLCPV
Ga0307474_1000013934F102903AGAAGGMPKPWVELKEAHGRVVKRMNVAYDEEYVAVEVEFEDGYSMNVDIIPAVQIRPQFQHVGTGDARIVRSYTSRISVAGGLKIRSR
Ga0307474_1000013936F069867GGAGGMSQRIYEYPEVIGKTVAKVTVANESDWHNISVKFTDNTAIHFSIRSFMQFEPEHINWTTGNGKILRSYPFVRQREG
Ga0307474_1000013937F051804AGGMAKQVVSTTLMIEILGPKDASAKRIRFVEGILRNCIKSLDKDFRQSRIPQMKGFSLRPEKDLRKRRKR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.