NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307474_10001340

Scaffold Ga0307474_10001340


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10001340 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17912
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009625Metagenome / Metatranscriptome315Y
F010670Metagenome / Metatranscriptome300Y
F036798Metagenome / Metatranscriptome169Y
F069103Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0307474_1000134014F069103GAGGMAPKSRIFDELLRFASTSRSRSMVTLAAVSFAVCHLIAMGTATAGGTTDLEGEIPRQLIHFVAELCRFALPLGVMVVGMIHGRSKQSPLS
Ga0307474_1000134020F036798GGAGMSTRSGDPFTAGLLIGVALVTAGVLLLRQSGELSHSVALAQSWPLFVIVLAFAQMVATVKARHQQGWGLLLAGNWLLANTMTNWTYIQISLPVLLAGLGLMSIIRVLRDCSGHLEEDHRATR
Ga0307474_100013405F009625GGAGLALTSFELGKLKIVGHVREELDRAGIVAQSIRCISGGIETPPGIARLTILVNGTLETLDLKAQEVEDCESIVVGETWHKIAALIGRLAS
Ga0307474_100013406F010670GGAGMTKFVLSALVAVTLMQSGLSVAGDVSTDSRAKPSSFVPHPHTNTHVYGAPIHSAIVGNSKVPHHKQMPKKRSSSAANRQSPP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.