NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306917_10136627

Scaffold Ga0306917_10136627


Overview

Basic Information
Taxon OID3300031719 Open in IMG/M
Scaffold IDGa0306917_10136627 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1804
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004853Metagenome / Metatranscriptome421Y
F090704Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0306917_101366271F004853N/ALADDRVSGTDADRHDEFRGGLLGWWRGGIKPVRGRIANAKSFGWAIYAAGFAIWLFGYLSAGHAPLFDWNATTPWWISSFVPNLEAELGLALIFASVIPIYGRAVWGNLARLFAFAAL
Ga0306917_101366272F090704N/AMNRFAACGDPRAERGPRMVKMTKDEMVEWFKSAPEGSRHQRMLWAAHKIARLTGVTEGGAYQVLLVALIEAESRPPDEYLDVLGLTR
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Institute for Fundamental Biomedical Research
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