NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10000314

Scaffold Ga0307469_10000314


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10000314 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18326
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018056Metagenome / Metatranscriptome237Y
F039368Metagenome / Metatranscriptome164Y
F048484Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0307469_1000031411F048484GGAGGMQRQLRVAAFAVSVVMALSVFSFAQDWDDYHRAGNISQTRHYGYDSGFRDGEKRGRHEGRENDPFDYRTPDWRQATHGYKNWMGPRNAFQNGYQQGYAEGFRSGFNSARPGWRGDRDDRYRGGNYGNGYYGGNYRYNSRAGYDAGYQDGASVAREDQYSNKPFNPNPRGRFSGRDNGYVREYGDKNQYRAEYTDGYRAGYQSAFNGRY
Ga0307469_1000031420F018056N/AAQSRIYSREYRDGLVVMEAEAPESVVRRVREFVVKT
Ga0307469_100003145F039368N/AMLTGIDEFSAKLLQVENAIKIVRAIQIAMLLSVAMFVLAGEMVGKIPRLSDPTLFYALSLATITIVGVILVVRRTLVLQSATTLATRPNDAATLNRWRAGYVMTYALSEAIAMFGLVLRLIGFSLSQVASFYIAGFILLLFFGPRRPIAAEA
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