NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10200158

Scaffold Ga0307469_10200158


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10200158 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1559
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002638Metagenome / Metatranscriptome541Y
F021195Metagenome220Y
F054383Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0307469_102001581F054383GGAGMAKELKKKRDEAKQAWENATVVMKKSKNADDFTGSKKAHDEAEKLRVEYLMAEKVSEADSDDENTLAMSAHG
Ga0307469_102001582F002638AGAAGGVRDIVLKYPIWQEPYRAAVIEANPKLLKQKIAGAEQAVILRLKQLENSADHHHELIALTDALTALKILAETTWAD
Ga0307469_102001583F021195GGAGMRDFKVGLHVQVKLSGGSLVDAEIKAIIETVDGKRLQVPFGEETARIYLWQVVEKLR
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