NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10319924

Scaffold Ga0307469_10319924


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10319924 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1288
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052094Metagenome / Metatranscriptome143N
F060889Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307469_103199242F052094GGAGMRIGFPGTGTAGRHLQPEVAGPEHEVPPEPDMMDQGTAELAYRRGAGIEVTLLWHRTTGELTVSVTDAASGASFELPVAADEALAAFHHPYADAALKGVA
Ga0307469_103199243F060889N/AALDATVRLLQGRIGCIDVVWVAHLSSTVRLSADTIVEVEAAFGELEPELRAQAAGQLRGRGADWELERRQGVIAEELIAVAAGIGDARPGQGVVIVIGSSSHATHRVVGSVAVSLARHSPVPLVIVP
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