NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308013_10056289

Scaffold Ga0308013_10056289


Overview

Basic Information
Taxon OID3300031721 Open in IMG/M
Scaffold IDGa0308013_10056289 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #181
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1607
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093966Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308013_100562893F093966N/AVDISTSAKTKIIDKIREPINRLNKMQFQKRFIEDRLFATLPNMESWLVQCFAKLNQMAEDTHGKKT

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