NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318493_10759332

Scaffold Ga0318493_10759332


Overview

Basic Information
Taxon OID3300031723 Open in IMG/M
Scaffold IDGa0318493_10759332 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)545
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004552Metagenome433Y
F017011Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0318493_107593321F004552AGGAMSTEVANTKYGVLIHHDEWNTLELKWLPTTKDATEAEARDTMALFAAETEKRKPRFLIVDTTEFFHRWADDMMAWRDKEIIPHYNAGGPAKFAFITGEGVPF
Ga0318493_107593322F017011N/AAGTLLQFSFRAIGVVDAEVAGAMSRAWAELVGTRLKRLVEAGTRLGMDPDEPPSIRSIK

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