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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031725 Open in IMG/M |
| Scaffold ID | Ga0307381_10007458 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-1.R1 (Eukaryote Community Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2283 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | -45.9539 | Long. (o) | 6.2869 | Alt. (m) | Depth (m) | 35 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010593 | Metatranscriptome | 301 | Y |
| F035154 | Metatranscriptome | 172 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307381_100074581 | F010593 | GGAG | MKAEDEKTLSDMEVECQEKQLSFDEKQQLRTDEITAIGKAIEILKSPDSMGNAEKHLAFAQTSTATALTQLRGEVSAGGVRGHVRDFLASEGRRLHSKSLALLAQKVEANPFGKVTKMIDDMITRLLNEANEDAQHEGFCDKEIGKSKVTRNKLSEDIDGLNAACEDGKATIMMLAEEIKTLSTEVADLDASVGEATQLRSDEKATNKVTISDTQAAQGAVGAATAVLKTFYEKASLATGLLQMDASRPKMGTDEWKALANPNFEPTGAGFGQGSEDKVDKGHKAGMQTFGKKYSGNQDAAGGVMAMLEVILSDFANLEADTKAAEASAQTAFDAFKVESKKTKAMKSKKIEMDNADKAAAELKLQEDTKDLKGTQDELLAADRYYEKLVPQCIDQGQTFEERTAARESEIASLKQALEILG |
| Ga0307381_100074582 | F035154 | N/A | VIQMLGDMEAKAKLEKNDEQVAMAKFETWCKMEIPQTQKSIAKAAETIELLNAEIAKLTVEAKVLGEEIAKLQADVASFESEKAGATAQREKDNKAFIAESTDYGESVDALDRAIVVLGKKTGDKPGASAVLLQLTESDHLPAQAKSMVDAFLGVMGKDFMADMGPDYAAPEANAYEFQSGSIITMLKKLKDEFRTKLADCQKEEMNSKHAYDMVVQDLVDSIENSNQSIEDKKVTKARKQEKAAQDKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |