NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302321_100248588

Scaffold Ga0302321_100248588


Overview

Basic Information
Taxon OID3300031726 Open in IMG/M
Scaffold IDGa0302321_100248588 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1882
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F026958Metagenome / Metatranscriptome196Y
F038953Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
Ga0302321_1002485881F038953N/AEPSGALYDKLHVSHDGYAGAVPIVHKSAAVSEVIGSLAIEGDDDPE
Ga0302321_1002485884F000451N/AVYSPYTASEMQGFAQVLADTIRARIQSGQNIYDQAAAPLKPGKLGRRGYPDYKVARGLQPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEAMPGRRQTASQIAFYNNQRERQWGVSPRDRQAVLAASLARPIVMLKAA
Ga0302321_1002485885F026958AGGMADQAERVILEAEDQVTPVVGQANAGLDSFEKKAESAHGKVIRITDQTRSSIQRLIASLEKQAEVYGKSGAD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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