NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307516_10001029

Scaffold Ga0307516_10001029


Overview

Basic Information
Taxon OID3300031730 Open in IMG/M
Scaffold IDGa0307516_10001029 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38709
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (75.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)47.5302Long. (o)-121.825Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024685Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0307516_1000102915F024685N/AMPAVRSQILEVARDAYPEAFEGLGPSKPLGERVFSGPTPHPNEVLNLFVQQKLTAALPIAYYMATRRGPNSLMDRNLPRDATLSPEILQSAITGLMELREVELNETHNLVFGPKGSHPCSTPNCPSRTLTGPAGSAACKKVFNHIVGSSRSGTKVLEVPEFYEDCRGELQCVGPGICSSCVERWESGHAELRKRAWAMLSDVFGLKS
Ga0307516_1000102917F024685GGAVPDFTTFSSLLRITAKYEMPTVRSQILEVVRDAYPETFEGLGPSKPLGENVFSGPTPHPNEVLNLFVQQKLAAALPMAYYMATRRGLNSLMDRHLPRNATLSPEILQSAIGGLMTLREVELNETHHLVFEQKVPQPCSMSNCPSRTPTGPAALEARRKVFDRIVGSSRLGTKVLEVPEFYEGCGGELQCVGPGICSSCVGRWESGHAELRKKAWVMLPGVFGLTD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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