NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316577_10143325

Scaffold Ga0316577_10143325


Overview

Basic Information
Taxon OID3300031733 Open in IMG/M
Scaffold IDGa0316577_10143325 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1346
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Source Dataset Sampling Location
Location NameUSA: Alabama
CoordinatesLat. (o)30.2619Long. (o)-88.2383Alt. (m)Depth (m).05 to .07
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020725Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0316577_101433251F020725N/AMNALRALEQAVLAEGQEWTRRQLEHRLQAESDALPAHCPQNGQPLTDTRWRPLQLRTVVGVVQVRVRHGYSAALGRWVCPAREAWGLSPYQRLSPELEARLTYTATEVGSYERAARMAGRWGSPCSDGCIHQHAQRLGGGPPEHDL
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