NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318501_10462507

Scaffold Ga0318501_10462507


Overview

Basic Information
Taxon OID3300031736 Open in IMG/M
Scaffold IDGa0318501_10462507 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)689
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001861Metagenome / Metatranscriptome625Y
F019217Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0318501_104625071F001861N/ACRVLTASGRVYVASMKQEEARQAVLSAYDRWAKQHPNQASMMGGFLFFRYLQAERSDLLDFRAAGSKWPIVHG
Ga0318501_104625072F019217GGAMNRLLIGLLLVLTAPLCAQAEQPDMAKLKADAQKVVSVIRGDKAKSQTYCQINNLGGEIDLAAQARDEQKVDALTKKINDLENQLGPEYLALFDALNNADPNSKDFQDIMSLFENLDKACPQ

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