NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307384_10098776

Scaffold Ga0307384_10098776


Overview

Basic Information
Taxon OID3300031738 Open in IMG/M
Scaffold IDGa0307384_10098776 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-2.R1 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1186
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)-49.0129Long. (o)2.8377Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008601Metatranscriptome330Y

Sequences

Protein IDFamilyRBSSequence
Ga0307384_100987761F008601N/ARLQVYIPNSAKVLSPNMSPMAVTTLTVLALLQSSVFCLVDANAFLKTNSHLKAERISEEDVQTTLLAEVEGTFGEGSASSRVKELEAILGPIYAALPKNEKGYLGHATVRYALHRLFIQRHGWSIKGLDAAGGHRNATSGAGLLKEQVPAYIQDVFEKRLAGRGFGLHELGVLASTIEHLVHSEAIKRLGHAFKVHNFMPTSLLSQSQADEVLDTYMVAYILGEDLSVMTLSEATEHKMEIHEQYMAWKDTQEFVRATRKNIMETEASAEQKSSGGLDFSLVARVVERVGERFGIFQDQDCKRTKDNLVKIEDSGTGRVLLSDFYKANLDGQSQFEESASYLRQLGALDESSKPSVVIVNYLTSPSMCIASSSFYAVCCMDECEGLLGHLEREIA
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