NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306918_10749102

Scaffold Ga0306918_10749102


Overview

Basic Information
Taxon OID3300031744 Open in IMG/M
Scaffold IDGa0306918_10749102 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)764
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002475Metagenome / Metatranscriptome556Y
F003418Metagenome / Metatranscriptome488Y
F025580Metagenome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0306918_107491021F025580N/AITSSDPARGGRPAWPDGTAEHTGGEGIFVEELHAELARRGIAFRVAGETHALATHDVATQRAGLESVLDDDDA
Ga0306918_107491022F002475GGAMRDERSFRVALVADRYVNPVPGGLDGLAVLAAAGWGVMQLPDDAYPAEVARLLLAEIAEQVEEFSRHGYLFVLVGERAGLGEALARVGVGLPPRVAPGSAGELSEFLATQPDPPALEPTENPTG
Ga0306918_107491023F003418N/AIFDGPALYVTATREPDIEASARTGTFWRVDTDAPGGLELIPGRL
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