NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315293_10012040

Scaffold Ga0315293_10012040


Overview

Basic Information
Taxon OID3300031746 Open in IMG/M
Scaffold IDGa0315293_10012040 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7889
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F071153Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0315293_1001204013F003038N/AMGLSTTDLGTGGGSSLAKTIAPGNHVLKINSVELEDFRFIEGAKHLILHLETAPIEGFEGFLLDKDDESKGRYVGQIGKVKASQYAFADGETKSGIKIQRDRSALIFLQSLSKTMGINEWFLEQDGKHETIEEFIDAFNKTAPITDKYLEFCVAGKEYLNKGGYTTYDMWLPKAENRKYAFGEVEGGKVIPYEESKYLKKLEVKDVNNFGGDDEFSKGDTTSSDFSLD
Ga0315293_100120405F071153N/AMFSGKFIIKNGKLIYATPQDKLAYKIYLDKLSEGQKIEMYLDFADGDHSKAQLAKVHACIRELAKESGYTFEEMKNIIKESTGLEDKSFAECSKDELMLAIEACIQIGRDNYNINL
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