NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315293_10197534

Scaffold Ga0315293_10197534


Overview

Basic Information
Taxon OID3300031746 Open in IMG/M
Scaffold IDGa0315293_10197534 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1656
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019829Metagenome227Y
F061848Metagenome131N
F082693Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0315293_101975342F082693AGGAMAQIDERVTIRLTGQDRVEINRLYRERETQTKQLGARDTFTSGYTPKASFTGLIAEYAFAKWFGVEFVIKPYDPTNDDVLGYQIKATERYNGCLIKQPHNPAGIYILGIVLNDYSEVSFRGWKDSTEIQRACYWRADVPKPGYFVPQAALWALSDLPETNELQTHRTTGLW
Ga0315293_101975343F019829N/AMTEYPIPDPGLTESTRQMYTEKYAETFKNFVDEVFRPNFIPALKPVDHSILLDELAILREKYLNGTPSDEHKFAAAVITAAMAVIIGI
Ga0315293_101975344F061848N/AISMAGVAFAYDAYNAPSALPVTPPVTVSLAPMAPSTTTTAAPLTDCQYALQLASQAGWPLTEMGTVARIIYRESGCKANAFNAKDSNGGSYGYYQINGYWCRPNKYWPTGWLQAQGILQTCNDLFDPVVNTNSAIAIWHNSGYGPWALPNP
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