NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315293_10272232

Scaffold Ga0315293_10272232


Overview

Basic Information
Taxon OID3300031746 Open in IMG/M
Scaffold IDGa0315293_10272232 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1368
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F001897Metagenome / Metatranscriptome620Y
F009883Metagenome / Metatranscriptome311Y
F032155Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0315293_102722321F032155N/AVSVGEWTAVGGFVIAILAAVYSSMRIIIRSVMSELSPNSGSSMKDQISRIEARLDFLYTQLIEKQSNTP
Ga0315293_102722322F009883GGAGMNEISIVITCLIAGTLWAVMAYSVGYREGQRQGYTRGRAVSRHIAARQKAGK
Ga0315293_102722323F001897AGGCGGMATFMDGYEGNKERTDRWIKTYPEGRLEATIVNFDPDKGSILIRAAAWRNQTETEPAGIDFAFGYQAAYNANMKRWFVEDTVTSALMRVMALVMGNTEKATKEVMASIKTETPAADYDYWTTKHGDVPSYATAVEAEESGTPSFGSSEDAWVPNAVPTCSHGLMRWNQSKPDAAKSWGGYFCSEKVKAMQCTPRWYVLRSTGKWEPQV
Ga0315293_102722324F000403GGAGMSDYMEIINPQTRIARLYYQGEVVEVYKVEQCDKCSKLTKFDAFGYQIGYDKTEKIIWFCGDCR
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