NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000004

Scaffold Ga0307477_10000004


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000004 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)480205
Total Scaffold Genes423 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)317 (74.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000566Metagenome / Metatranscriptome1020Y
F006203Metagenome / Metatranscriptome379Y
F012137Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000000429F006203AGGGGGVQILEIGVELLSGLALGVLPLLIASCIVGSIVVALRAAGRQQGR
Ga0307477_1000000431F000566GAGGMKRFSLSAITLIIAAAISATAAPNPSYAKAPAFPGTLANASYVYVASYDGDQFNPNLLPEDRDAIHAVQDAIQNWGKLTIVYQPSEADIIILVTSRPSEDVMAVYDGHEWPRGPFLWRVMGPSGLQRGETPLVTQFEKGFESVQKHK
Ga0307477_1000000432F012137N/AMFKISIVDSASRRTVVVEGTLIGSWVPEFRTTWTNVSQEIDGRRLVIDVSNLTLISREGEDAIFDLMKEGAEFSCCGVLNRHVLKRLARKRQQELPRR
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