NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000058

Scaffold Ga0307477_10000058


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000058 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)163425
Total Scaffold Genes160 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)112 (70.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000503Metagenome / Metatranscriptome1073Y
F000629Metagenome / Metatranscriptome972Y
F001278Metagenome / Metatranscriptome733Y
F005371Metagenome / Metatranscriptome403Y
F040253Metagenome / Metatranscriptome162Y
F069726Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_10000058123F001278N/AMSKLLITEITRMGPAFCIIGLQHQNEKIQSIRPVPSFSNGWPHFPHHRGDILECTLTPFPGNKPHVEDRVSTRGFKKISAVPEAETVVYLRKSEQARSLPDLFGCPIHENKKGSGLYANPREAQRSICGCETQNLRLELCANELRATLALPSGEVLRDLPVVDRDWRDFVDAALAEGRGANRTARLERFLNSHFHYKIMSCPHHFIRLGLTRPFYDLCWLMLDTLFPLPRREWLQEF
Ga0307477_10000058149F000629N/AMPNLYFCQPHAKNQGMLRAVLSVNECDRVVSQHPATYVGDSFPALVNGHGSAHDFAVLSVRADETTAVWRPGYYRLDSDLTQLNESLLALLR
Ga0307477_1000005818F040253N/AMKKKTNNESGEATRASVKKEMAKPRMAKSARQGGKNIAAARIAPGKPWKNQPRRLLRGAR
Ga0307477_1000005820F005371GAGMEFMAKYRIGTLLAVVAASSSLFAQNSGSLNDQDHPTVLDARQIVAQSITATERSWQARDTYTYMERDEDRRLDELGKVKSEDIDVTRMILVNGARFEQLIEHNGQLPSLAAQKKSDEDLDKLKHETSEDKAIRLRKDQENRAFLRDLLEAFDFQLVGEETIDNRPSYVLQATPHAGYHAHGKFAKMFSRVQGKLWIDKQDFGWTKVDGEVTQSFTMGLFVARVLRGSHILMEQTRVTESVWVPRRLEMHASAKILFLKSIDMQRILTYSDYRPAADGPYSVSR
Ga0307477_1000005847F069726GGAMIKPPPDVFELALLERAALAMKAVMEQVIEEHAREGLPLYIWRDGKVVAVPAEELRPRS
Ga0307477_100000588F000503GGAGMSAEAARRAPLMPLRELVRLYRSHAANFGEPVPLSAFGLTLQEAERLFSGYDEDYHISRFFHFSEAIGPKFSINGFAATHVSLDPEIETIL
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