NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000093

Scaffold Ga0307477_10000093


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000093 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)129721
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (64.04%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000688Metagenome / Metatranscriptome937Y
F003670Metagenome / Metatranscriptome474Y
F008511Metagenome / Metatranscriptome332Y
F009983Metagenome / Metatranscriptome310Y
F016091Metagenome / Metatranscriptome250Y
F024494Metagenome / Metatranscriptome205Y
F053492Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000009321F003670N/AMRVSISVKMTLAACFYLLTFFLTMPAWARVHSHPAKQENPSEPGYVLALGAANHFLHAWQTGDVETGMVLVSDGLRHTQSADKLEEFFSNATDRAFEITRGHGHHGLYSFPVVLVTLRGSHVVRRFSEIILVETGKNDWVVDKLP
Ga0307477_1000009346F009983AGGAMKISRICAFVLLLVVGSVMAFADGINDPKIIIQGVSGGSSPQSCEKGCRNVGVNFSFTIPKSGKGFLFFTNASGKNWTSLTLVEKGVPASAISCSQTLFLSCAKKTVGNSVEIILSGIKGGENARKGIMNGQSFEIGFACVAQSCWTNRGSTMTAHAGTAPEPGTVALMVTGLGAIISRRKLWKSRLKA
Ga0307477_1000009367F000688N/AMTHFPQSNVNQRSPRVQLFGSVTAAVMAEGGQRARAKLQTISITGGLLQLQHELSSGDFVEIAFHTRSGAIRGMAEMLLPTRKYQSACLQPFRFIALGDDDHRKLRMALDSALDRRFLDPASEQLRTPLGF
Ga0307477_1000009369F008511N/AVGVIVASLSLIFGLLVVSFPVSFPRIIVTSWQGGYLVLVMMVLTLVLDAFLYLRVSYLRSSKPTVLVAACLGSLPIIVVGGLSFLLESAVTQTLSLDLPNVQGRVNEEVLAHTYLGLVAAVFLPFLVIRLLQQFKTTS
Ga0307477_1000009370F016091GAGGMSIKWLLWIGLYLVMGVLVPWATALSWAHQHGSELRPRPRQLFQRGELGLVGLVVVISVIWNLLQSQFMQQTIAVAAVLLAVVGTMAGDVWIESYCRLSTGTSCNPERTWRDSRNLAFLVFSMAVVVEILLDRFAKVAAL
Ga0307477_1000009373F053492AGGMSAETHHETRKVGAVIYLSTNRPLHLPDFLHEFHQSWPRLLLQKTGKEPHRALFRVGNSDFTLELHHTPVPLEVTGPVVQSARHWPMAGAALAPHQAHLSVAESAENSDVLSLACDLTKAIAALLPITDSLAVCWLNGPALNSSESFVDTAREMFGTGLYPLKLWVAVRWDAQAGALHTRGMAQFGAPEIRLAEQSDADPLMVDYLFHVAQSVLTLHHSIPDGETMDSPQGKLIIEKSGIPGRRILLLEPARPK
Ga0307477_1000009396F024494N/AMHCAHVGATFKTEEASQEENPLKLKSLAVITLIVLGCSAAFGQTFSLGFQGHSGTQYCDYEVVKVSAPYAAGTHNLTTDCGSSVDGVMVGFKAYIPATSGAAVTGTVIEMGDNFVDASYQAYTGCQVDWVTKTKASTLHYGWAVYESCSGGSDFLLNYGYLTTKLGATKQQAGAKITSFGAALAKAGTGTKK
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