NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000769

Scaffold Ga0307477_10000769


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000769 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31623
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (45.95%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000624Metagenome / Metatranscriptome977Y
F000696Metagenome / Metatranscriptome931Y
F000703Metagenome / Metatranscriptome928Y
F000739Metagenome / Metatranscriptome913Y
F013395Metagenome / Metatranscriptome271Y
F099022Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000076919F000703N/AMLVREYRESDLAQLRAIHAAQGFDYALPDLSNPLFVTKLVLAKADGVSEQPDMAHGDAIFGAALLRLTAEAYLLLDPRAGTPRQRWQALLALHAAAERDAWKRGLEDVHAWLPPPIAKKFGKRLARLGWLRDNAWTPYCKKLGSPQ
Ga0307477_1000076923F000624N/AMLIHRIGWPAAAGWLTTLIPVAVQFVIFLRWLHRRMRNEEITRAFVRDIATNHLPHIYNALQKIAAEQGITLDETPLVQFVDLNHRRRS
Ga0307477_1000076924F099022N/AMKRSTKVLAGFAGVIALLCFADEYPALRFRGDGHFSGGPVFGYWIRLRPIPFYQAGEHVFHFRGMPNEELSLQLYAEGKSHDNRKELTNLNTEIEATLVDQNRRVVCQASGVVPKESDPCDCKDGKDDCKVWTEAEIEARGQKEWVLMSGGDAAYWHENCLRMRLKPTDSYTLTLRIRNLDPKTPKINLVPTLEGGQPDMP
Ga0307477_100007694F013395N/AMRRAFIGGAALLLCGAIAARSKTESLLFVFLRVDHEQDVAILRPMIAPDIGVQLDSGPRQLAPGTVLTCEMLPREHDAIVEGQVSKVSEMVLNCGEHKFVVKTLDFAPQRK
Ga0307477_100007695F000512N/AMIHVLRETHDVPEGVARSLGLAGGINRFREPHYRAVWGWNRLAWIGGKFAERDPATGALLREVVELRREPKYPKVNRWHIEKWLPPETYGSPRAWWAQTVEIEGGRSIPALGPYPSRGEYEHCFTLEGPRGEFLQLTPTVAEHIARAIEWSRHHSRSAGKRAIYDREHRQERAYDAYAYDILDDAVPAFHRQPFVTII
Ga0307477_100007697F000739GGAGMVTRVEIWLKGLLAAAISGAAGGVLTGLAAVGIDPQHFNLQSGVGATFRIGAAAALINAVIGVAAYLQKSPLPAE
Ga0307477_100007699F000696AGGAMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKTQRALGNAGGGGFIQDDVLLVVPAVAQVDTSLQASITDATAPPNQLPTDLLVPVKIWERSNGSSDDFVEMADLSQHGGLPSRAQGLTLSVWEWRADGVYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDEAAGDALEDLIAAAVRREQQSARRRRPFSARSGYTPF
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