NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000800

Scaffold Ga0307477_10000800


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000800 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30983
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (93.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001727Metagenome / Metatranscriptome645Y
F002962Metagenome / Metatranscriptome517Y
F071061Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000080012F071061GGAGGMRDDLHCDCHICEVEGHIFDLLAEPPGSAQFLTLAASSPVLAKFTNISELLAYLHSPRTGDYACLDVSQLLTALVAAWTTVPDSELIHSVLALAFAPTIHRTYREVCAWFLELEPEDIAQQILAFFIELVVSAVAKNLVGILPIAVSRSLRKTCFRWAEKEQRALLKRQDDAQTEMDGSERATDATFESVSVLNDFLDYCSRQGLLSRFERELLIKFKVDGFSGKEIQNRHTVLSEQAVHLRVHRIMQRLQDAALALGAPKRGSQTTPAKSCWPHPEKAVQP
Ga0307477_1000080026F002962AGGAGMSIINRPPEMVKREYELQEPIAVAVEKYATFIQSTPDHVVNSALKIVIWRDVEFRRWRKQTQADRKDSHATKAARA
Ga0307477_100008007F001727AGGTGGMHGGARPLNRNLRISPVDRRGYTIGHPVLVAAEEIGRRAMEHAEQLLFDPAIAATLLEEAAASVSRALLSKRHSRQAGVRDLPSYLFRAFIRRINRAKKRQLIQEAAILAHLAESPNSTDPNDLDLKILVDELLTRSDPVTREMFYRRIQGFSWKEIGSSYGISDHAAESRFSQAIRKLPQRIGLKTDA
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Institute for Fundamental Biomedical Research
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