NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000931

Scaffold Ga0307477_10000931


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000931 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27344
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (45.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005560Metagenome / Metatranscriptome396N
F014247Metagenome264Y
F024998Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000093117F024998AGGAGGMFTCANCQKREFQITQMSEMRLLAECVGCGTSFLVDSISEKRSRVEATDVNQHLVWNWKNEQWVPAKRA
Ga0307477_1000093123F014247N/AMASVGRGLFWSGLWVFSIATGLASMIFMAWAFYVETTGRGALFVEPNRALAAGELATVATGMVSLMILFLRGVSGRN
Ga0307477_100009319F005560N/AMFHRWEILRGWIPGIVFAAIAAGIEILYFNYMIARGLADTTYNISIGIGQLPLSISFFLALGNAIVLLTLWMSVFENTAFVMAGPDRKVRRILFPLRMIRAAALVLAPFTIVLFVPYIMESSWYIGWISGLSNAIPSLQQSAVNFYNWAFDVSRTDPSYRFVASQLSAALASTVVAGLQIWRVKGTRNMMLLLRRRRK
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