NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10064853

Scaffold Ga0307477_10064853


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10064853 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2520
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007243Metagenome / Metatranscriptome355Y
F022093Metagenome / Metatranscriptome216Y
F034727Metagenome / Metatranscriptome174Y
F087658Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_100648532F007243N/AMTSLHATVLSAERFRDQYRLIVQLVPSEFVGPFERLRFKKNPYCGSFGTSVDKSWVTLDYRKDPGFKAGEAFPLWRTD
Ga0307477_100648533F087658GAGMPEALYFQITLEPHLKHSGLETGRKILFLAEVPVNTAKEASEAPEDDRIVCETAERLAAKLTCMAMTGESAQPGEDEMRASFRSISIMPEDVGQRRPDAEKDGVRIWLIGARPE
Ga0307477_100648537F034727AGGMTTDEVLDALSRYKRDSKENDRQTATKLGITHPILEDWLSGRTRPQKDTLARLAGFLRRVGYL
Ga0307477_100648538F022093GAGMPILKRVEFSKGLRPDSPRFVLMIEIPDSAAAELTARKVSLEARAYEVAFETTHADRSDKPEYQMNLMSCTPGKVKNIESLGEPSLLAPDACRAWVIKRPSPLQELLDKGWQSRQKSPGPKG
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