NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307475_10071553

Scaffold Ga0307475_10071553


Overview

Basic Information
Taxon OID3300031754 Open in IMG/M
Scaffold IDGa0307475_10071553 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2652
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004291Metagenome / Metatranscriptome445Y
F040290Metagenome / Metatranscriptome162Y
F046497Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0307475_100715532F000092GAGVKQHLGRQSGVQTVEVSLLDGKVEVTPKEDGQIDPAQLLKATYDSGVTAAEMDMIARGKIVKDSSGGIALQVEPNRSFALTPNELSKGLEALADIPTMVTVRGQLFKKPAGKKKADSSAPLKLLILEVQKKE
Ga0307475_100715533F004291AGGGGGMSKKEMALLALLVSIVSPVAQAQIKHIEMRVEGMT
Ga0307475_100715534F046497GGAGGVRTRNSYFIGRFARTAAWFFLLSCVSAAKAQGPAPETAPPLFPGGGLISYNSVFTTRGLMPRISSGIPATAFPTFSHAADFNFTWGFHRNLDLAVLVPMVTNHFDGGKAPAVGGTGLGDAMVLVKYRFYRRDSERGTTQASVTFGPKVPTGRTDLTDTNGKRLPASLQPGSGSTDFFLAANWTYTGLFNLKRLVADEDFHSLIRSQGTQSTNIGSDIESRFWLSYRPYESKNVAREWFIGPALTWLHSQDEHIAGVTQTGSGGDALLAGITNFVGLRPGMHVWLGMEWDVIHSSGAMFMPVRRHISFGITQQFRVHH
Ga0307475_100715535F040290N/AMRSARPIFLTVLTIALAAYALDCGAAVTPEQAMQCCDSVPCSSHGHHAEDCCKAMQSMHAPFVQPSPAHASYSPFVFAALPVTGESHELDLSNGVIAANGHAPPIFYASAPLPLRV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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