NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315328_10096106

Scaffold Ga0315328_10096106


Overview

Basic Information
Taxon OID3300031757 Open in IMG/M
Scaffold IDGa0315328_10096106 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1701
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004879Metagenome / Metatranscriptome420Y
F014628Metagenome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0315328_100961063F004879GAGGMSKANELKLYQREHFTDKIEKKLTPEIEREELKIKTTINKILDKGIKSFSKSIGADKVIARLEKAEEEKKEASRLAYSFFNNKASSVVSYSKAKEYKFDRDDKDRISVSDCTSQLEKWAEKQAEQFAETTPQGQRLSYLRALQTKAKDLVAEASVSDELKASLDNLFSFVGVSWEQKLPALPRPKK
Ga0315328_100961064F014628GAGGMKLTKEEIERNYPPIINGTYKKDNPDKEIGYQKWEIRKTHEVVMLYTITAKTKKEAEDLLEKKECIKVEEVDDYGDTSREKIDGKHINDFSGDEEAIWKKVEECIPSEDTDSDNDFKPFI
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