NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315328_10296460

Scaffold Ga0315328_10296460


Overview

Basic Information
Taxon OID3300031757 Open in IMG/M
Scaffold IDGa0315328_10296460 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)945
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034394Metagenome175Y
F087902Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0315328_102964601F087902N/ADGAVKAGHGVIVSVHVTKAGASGDKVVFHNGDANSDPVEFTVYGEGYQNIEDIFRRFENGIYAEVTGTTARYLVVFK
Ga0315328_102964602F034394N/AMVTTTTYCSVNDIIDFLRVPITSTTTPNKEMVRKIIARKEDEFDRRVGHTWKTKKITREVHDLPLLYTFGWGTPLFLQHRNIQILDSSAGDKIEIWKGESDSWENIVGQDQWYHAEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDTTIPLDVTDAVIKMTAIEVMNTSFRMDEIPSGGSVSPSESKRFWQEDIDLCVSNRREVFVLP
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