NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10000088

Scaffold Ga0315907_10000088


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10000088 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)126063
Total Scaffold Genes166 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)117 (70.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035309Metagenome / Metatranscriptome172Y
F068832Metagenome / Metatranscriptome124Y
F103267Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_10000088138F035309GGAMKKFIVSMIVGSMLIATPAIARENRDRHHREYNHRDRDRNTGCGWLCGAILGGIVVGTISSSQRDSRDRSREYDNQYYPPDNRYDRRYCVREQVTEWYRGERYVYWQTRCN
Ga0315907_1000008815F068832GAGMLTVLNALKWIGTACVISAAGARSFEYHNVDLILSIVGASLWGYAAYKMEDKALLAVNGFITAILLYGVFK
Ga0315907_1000008848F103267N/AMEVAMEVEVYSFPTMENPKDVEFTYCEILNAQRRGELIPVEALDWMDSANTWLIESRKCV
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