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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031758 Open in IMG/M |
| Scaffold ID | Ga0315907_10001133 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36618 |
| Total Scaffold Genes | 63 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 59 (93.65%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014358 | Metagenome | 263 | Y |
| F038590 | Metagenome / Metatranscriptome | 165 | Y |
| F039040 | Metagenome / Metatranscriptome | 164 | Y |
| F053072 | Metagenome | 141 | Y |
| F075680 | Metagenome | 118 | Y |
| F080867 | Metagenome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315907_1000113327 | F039040 | AGAAGG | MTTVINTTIDTSILDIARNSLVDGVSKTGDLIQGYADVLCKVFNTKNMAGETIEHWFNLVGKDKKGIKEERARFVTAMMARGHVKPDGKPSATVDTYWMRVKEASGYVPKGRVTGGTDVDSKTLAELKTMINRILKSEEDGQDCNASMFKGNLMEVFEGMGGDVDNLG |
| Ga0315907_1000113328 | F014358 | AGG | MNDWKMCIDCGDDVPTERYQAFCKFCEQDRERSAGEERTSWCVVQEYGKGNYQYVTPTSAYTTLKQTNQKELRG |
| Ga0315907_1000113330 | F038590 | AGG | MRPRHVKVDRLSKPVTQTDYLQMLGEAMKFARVEESKPVLNARELPIHTKREVK |
| Ga0315907_1000113340 | F075680 | AGGAG | MGYRSNVMAVFYTYDPNEYPSIKLFIDEHVPEWCRGDEYMTTFTGSNNLHGIKFDLQDVKWYESYPDVQGFEQALKKFEKLADEGSNWNWEFVRLGEEVEDVEQRRSYNADPLLYVSRSIECDY |
| Ga0315907_1000113342 | F053072 | AGGAGG | MVVVDIGYRKLVMTKEKAMMLVECLESADVYEEKWWSDDVRKEKGMDSTYTYHVYPNEAHFGMRIVSDTHYQMARLAGKPQEK |
| Ga0315907_1000113345 | F080867 | AGGAG | MSMNTLSLSNVVVGEDLQKSLDKEGMKMSAVYDTLDPVVSRLATLNPLWTFVVVSSGHGSGNNRIAVGFSVKLDGEELGQIGLSYMGNRGKVISISNDRIGKGRQRSDSYRTQDADKAILMAKKMFGKMNPSERIQKAKDAAERVVSRASWNKERERTQHQSLVKNEMLAWAETKGNAMFLEYLKAEAIPSLRHKVTVSMEKVELLDTEMKTIEKVQEDFSNNKTALVVKDLGKYLVKIGDKVDLYEDNTLPLDMRMKMGMLKLVEDEQYLTDVGCKVSSEIFVLLVDELTNVSEGV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |