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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031758 Open in IMG/M |
| Scaffold ID | Ga0315907_10001453 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31968 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (25.93%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001775 | Metagenome / Metatranscriptome | 636 | Y |
| F005529 | Metagenome / Metatranscriptome | 397 | Y |
| F008073 | Metagenome | 339 | Y |
| F008081 | Metagenome / Metatranscriptome | 339 | Y |
| F014605 | Metagenome / Metatranscriptome | 261 | N |
| F024318 | Metagenome | 206 | Y |
| F034898 | Metagenome / Metatranscriptome | 173 | Y |
| F048316 | Metagenome / Metatranscriptome | 148 | Y |
| F099147 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315907_1000145310 | F001775 | GAGG | MRHLLDDERIRIAVISFLIGVILAFVVFPRPEFETVYKTEIKTETDTVFVSQKDTIYVPKTKIKTEVLRDTVLIDFKPKISQFNASFPFEYGSTNVSGEVLGEVLKMTATNDYKIPVVTNTITETKTETIIKKSKGIYLGANVNSLLQPSANVSYLDNKYLFSYQYQPLQRVHQIGVSKKLF |
| Ga0315907_1000145312 | F008081 | N/A | MDETQVLNPFGYGNASRVIDENRKPAEWYWDYLEFNEVFAENEFYVLFSDGLLVKKGRSKFRTSQYLKGERFTSFKKVYERL |
| Ga0315907_1000145319 | F024318 | N/A | MKYLGKEIQRPGDLTPKGIRSTYQTEKLPFNETFERLWQLSNTKN |
| Ga0315907_1000145324 | F034898 | N/A | MTKEEIVKELQFRATQKYLIYLALQEIMLDNYEDCTFLKDYDHDLTVKHKNIINSLKRNATKAFRFLEGYDEGEATIKQFHDFVKLFELIHEGIDRGGGVYNECLNAVEKILDKDAEIYGNGGGGNAKPLA |
| Ga0315907_1000145327 | F008073 | N/A | MKETIIKHLKKMEFVCGLKQFKEYKKEEATELINCLHDLFKKFGWMTEQRVDYILQAGMRGQYGDFYHVNEKTVNGWITQYYQHHQSQIVMEIQNQNNKGKEPSAEEIAYWIEVGKNIFRENYQHAKDTGYCLDLAEWGINWFNKFQEKGILKPWTFNVEEIEQDVRKELRLTKHWVEESTVGAKSKNKIWKLFILESIRENRNLDKLI |
| Ga0315907_100014533 | F014605 | N/A | MKVNLAIEIKDIEGNPLQGEPMLLSKLVGNALFTAEEKDDPIRVYELAKKIYYSEGEIEMTKSDADLIKDKVKAKGFTVLVLAPLFEALSDK |
| Ga0315907_1000145332 | F005529 | N/A | MAKQLPKSKPDYSLEIRYRLRDGQWSPWSNKGKGYFMSMEIVQRQIRLIAAAYQGREKEVKFEWNGKLCDFTGNPTGKVIELK |
| Ga0315907_1000145344 | F099147 | N/A | MIKLLVDLVPFEKGEVICVGKTYNTYLVDKGLAVWIKVDKKEFKTK |
| Ga0315907_100014536 | F048316 | GAGG | MKRFFSWSKGFFSENGEASSKRLVGVASGITLCITLFLNQNEPLVYSVAALSAAALGITAAEKIFKKPNNENKS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |