NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10002130

Scaffold Ga0315907_10002130


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10002130 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25563
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (24.49%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011074Metagenome295N
F019816Metagenome227Y
F020651Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000213017F019816N/AMKELLPFERQILLAEVYHYAWYNEEAYADLLAFIDKYQTILDKPVFLTQINNNDTETTNLESLAYGQDLDTNPSINEVQ
Ga0315907_1000213022F011074AGGAGMTAFSGERIRSLNTTIFKQNLVYLMQLVGINNPGDVKLAILEDWVRTQYGNFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMIPQERVEAIPHLTDLEIIDYSYQEYKLLENRTFDKLFNPLSVFTKLNATGIKKWTKEDGALAKKKLMEIITYKANKMDIITAKQYRDEWTEQWLKNQARAVAVALFFEEQIKIGKVSFS
Ga0315907_1000213029F020651AGGMKVAILLLAQNRHDLTQRVINHNFYNSGYNADCFLIDNGSDTHENFNYPFTGYDLSKEKRGIAAGVNAGLRMTENYDAVCLLANDILLPENWLSKWVMFSQRVSKTGIIGIHCVEELPPIVDGVHKTHTPFGDNFITRELIDKVGGYNEAYDPYGMQDRDYGERATITGFTNYYLPDMRSEHIGHDVGNGTEYRRMKDQSLARAQSVWEKYQDIYHNQNKIRCEYSA
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