Scaffold Ga0315907

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10004130 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031758 Open in IMG/M

Scaffold ID

Ga0315907_10004130 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16529
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (27.03%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

16529

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (27.03%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (30.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.6898

Long. (^o)

-83.2813

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F009808	Metagenome	312	N
F019647	Metagenome / Metatranscriptome	228	N
F038230	Metagenome	166	N
F045094	Metagenome / Metatranscriptome	153	N
F052594	Metagenome / Metatranscriptome	142	N
F054865	Metagenome / Metatranscriptome	139	N
F090393	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000413014	F038230	GGA	MQCKKDRNAYMREYMKRYRASMNEYTYKKIRERENHRLRAKYHAMTDEERQRYIEYQRTYHKLKQFTNE
Ga0315907_1000413016	F003786	N/A	MTNLTQYQPRNSDEQAIIIARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFFANIAKEIVKTFGQIAANEIEIAFRLFSAESLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRHQVQMEERGKAEREKLYAEFPTMIKEFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPPESLDLLTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK
Ga0315907_1000413017	F045094	N/A	MNDISKRFASYLMDDYHIKGTTEEDVDKAINKIFRYELLDDAQQVLFNEIMTEALDVPWIAEQITDVWDRYEQEILDCKKEDYENR
Ga0315907_1000413018	F019647	AGAAG	MKIVKGIVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEAQTPAAQAEQSEKPDLAALVFELSAIYSQAYIDIYNKISEAGIPHENATAATSTIFIQVFQKLR
Ga0315907_1000413019	F090393	N/A	MALDRKTPFNVVFYDNEEQKIQNWAFKGSSRLALLVYTITSQKDKIEANNINKEEEIKKALDYIIHDLKKFIETPYTTEDNV
Ga0315907_1000413021	F002778	N/A	VKEYNAQMMEIKAFCDEVNAWISTAPSAEMLDECDEYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEDEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLIITSDNYRTLLSSFRQERILIGHMTT
Ga0315907_1000413028	F054865	N/A	MEVKTKRFIIKYREGIVSVAANDVAEAIERFKELRIETCAKELTIVPEDEMYKRREELFRKE
Ga0315907_1000413029	F009808	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAAATVIALLELWFSIQGQSTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPKTRRRRLVKETTTTNITSTQPIKFTMAVCFMLTVAYLPAQNNHFFAYNTMSLEKIDKGLLERRYYSEADESYTVDTITYDMLSGINLWDGYSRTTYDNTMFMTYGTQNFEYYPVAGLWKYKNKYYDYIGLLKFVSKYFKRNFLNKKITYGKIRRH
Ga0315907_1000413032	F052594	GGA	MAAKNYGLDKKQIALCDAMIAKYPKGIKTNNVVSSASTLISFYNSKDERNKQFYQYMNPERMVSLLWQVVKINNEKEDVKESAVRLLNKLLQDIVVN
Ga0315907_1000413036	F001640	N/A	MRYLLLFLPLFSFAQDVVKDTVYIQKQGNIYYIIQQTTLSDSTVTGSKQILGDSATAIQSLVTDAERQSNTLAIHAKPIITKGKTVQRINYYNDLHVQISGKPVYFTTAQRDTAKFIGDWRLNFNGEIIDGVIQLNSNKRLIFNPDNGKVYSISTNLLLSTFTNQVSFAFNGIKYDLYKYADGKFATVDGDVRLIKLE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315907_10004130

Overview

Ecosystem & Geography

Associated Families

Sequences