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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031758 Open in IMG/M |
| Scaffold ID | Ga0315907_10006826 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12002 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (51.61%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001964 | Metagenome | 610 | Y |
| F002227 | Metagenome | 580 | Y |
| F003748 | Metagenome / Metatranscriptome | 470 | Y |
| F009134 | Metagenome | 322 | Y |
| F012771 | Metagenome / Metatranscriptome | 277 | Y |
| F028148 | Metagenome | 192 | Y |
| F086598 | Metagenome / Metatranscriptome | 110 | N |
| F097203 | Metagenome | 104 | Y |
| F102590 | Metagenome | 101 | N |
| F103133 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315907_1000682613 | F086598 | N/A | METDKIVQLTDNLLRLAAMVKRVSESVDRIEKTLKQHDRKIQQALEQSSQSERNSDDSEWEGFGPKPEQQAFNPNAETYTVELGHGPYTIRRADGEDDKTWAGRKKHLLNQRVGFLNSSGASGTPEQEAYLKETYDRLAAHGR |
| Ga0315907_1000682616 | F001964 | GGAG | MSRNLFAPPKFKVQISGAIGWSDLKERVVSFRTVEFRTRKEAEQAARDLNPGEYTQGRLRVVPVEMPEDYDVYPIPEWSKANP |
| Ga0315907_1000682617 | F002227 | N/A | MKLTIQSKTNAQTIIDLFNAIVTGEVQEHGAQPLSIYDDDKHICSIVAANGEQILELIIEREEGDRIVQQGEPETL |
| Ga0315907_1000682621 | F102590 | GGAG | MKTQFTPGPWRTTGLNVRAGDALICYAMNHHANAETPEHEKMANARLISLAPQMLLALQRLTHPMADDEDLDYAREVIAKAKGLQ |
| Ga0315907_1000682623 | F103133 | N/A | MRYKIQLSTSTGGWSDLRASYDGENYEPCLFPTRKAAIAAREEFGELSEFLETLRIVPAETPETENIYA |
| Ga0315907_1000682624 | F028148 | N/A | MKTIHQIIREIQFFDPAVRAFDAHDLPQSVRAYLHHNYRMDARLTEEEQQLVEISFEPFADNLREAFQDDPRPDATRFYLFDDGSLYVRTNAGPELWADAQVFVVERILPNMRLTRLEADLMREIGMDEQVSEVRDDFFSAFAHILHRDCGIPHCDARNHWNAFSRQLGDSACESIVLGGSESGRAEGLRFASEYAVNA |
| Ga0315907_1000682630 | F097203 | N/A | MNYPETIPAAYQSADLERAYRMGWNHGHGIACHNVPTIGDRICPSIDWVGLGKLVTADNIAEYHECLCHAAESGSREYSPFEFVAHEFNESEDSESLWEAFESGVADSIRFDLKSYSYAELV |
| Ga0315907_1000682631 | F009134 | GAGG | MRNTISSKENVSLESLSALVRSKLAADAASTLERIDSYELEGIKDESTREQILGSVAKRSALVFGWSEQGEQASVSINLLGSMPDRTSVEVNVSEPQDK |
| Ga0315907_100068266 | F012771 | N/A | MTPTKPKRPTPKIFVVSDDTHKRLKDYAQRKGYKLQFVADEAVSEYLKRKEQQ |
| Ga0315907_100068268 | F003748 | N/A | MFQVNRKDAGGRYIDAEGEYTVTLTKVEENLDPKGREVCKVTFTTGEGASITDRFLNQENTWFRVNQLVAATNHNVPDGTQVDFLGVKGSYANFLKSMIGLELVITVRSEEYEYNGEKKKTLRLKGMKAVAPVAAETEEKPF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |