NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10009747

Scaffold Ga0315907_10009747


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10009747 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9659
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023329Metagenome / Metatranscriptome210N
F024101Metagenome207Y
F031460Metagenome / Metatranscriptome182Y
F053253Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000974711F053253N/AMLEKVTMLDFDLEMPLEKILTQMLDNVEGHIVNCNCKHCMSLEVLAYMIMEKE
Ga0315907_1000974721F024101AGGMSRPKAIHTMVNEVFSKELDNDLIDEIVEERNFIVNTLKTWINTDEMWQELVDNKEARKLFINNIQLLFMQETENSVLIELATINQGVDK
Ga0315907_100097478F031460AGGAVAKVIDSVELNLQMWSTVTLSADEIQDIYPEFEDMVDFEDTDELEQALQEYMDMNYIDHIQYADGALDDCTVHFLYEDDGSE
Ga0315907_100097479F023329AGGAMVEEEQDKEIKQLEAFFKYNIPNDEILSGRLKIMLADLSWQMDLPTWTKEELDVMCARMDALVEVSNLLYDIQWHKQNWERKTSGKSN
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