NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10011195

Scaffold Ga0315907_10011195


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10011195 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8860
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009003Metagenome / Metatranscriptome324Y
F036096Metagenome170Y
F053068Metagenome141Y
F073090Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001119512F073090GAGMNLNYNSMMYWYGTAMEIDSLYQLEKLKTHYYSKITGIQASSYETLKTIYENKQAIEKAIAQEKEMQIKDLKKRNRKLIVHNTVLSIGLSALAISTVYFVIL
Ga0315907_100111953F009003N/AMKAKEKAWQLYSNYFDIIENGKQEGQLAEVHIKAINCALQCVDEAISNAPSDIMQDFEGTGEYYSVKAYYHHVKNEILKLNGKAPKELDDRAAKG
Ga0315907_100111955F053068N/AMTQEKKETAIRRLHLTLKRRFKGQAIRMTWAEMEGLLNAVQIIEMNHIQNAYNDGYLDGESGLPNRTQIEA
Ga0315907_100111958F036096N/AMKATLTFDLREDQHAFDCAVNGMKYFDMIYEIQQHLRSLEKYQDLTGEQYELVGKIREWLASELLDAGIADKF
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