NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10013680

Scaffold Ga0315907_10013680


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10013680 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7833
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (96.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003212Metagenome / Metatranscriptome500Y
F011484Metagenome290Y
F013279Metagenome / Metatranscriptome272Y
F093528Metagenome106Y
F095162Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001368013F011484AGAAGGMKELEQFLNVEAEWVLERLSTGTESSDRNYYQGRLDQLAQVRRLLNLPQIMRGEG
Ga0315907_1001368016F003212AGGTGGMKDKWLVTLEIETYDGDPRQWDWGNLYIGEEDIKIISTDFKGRVLPTEGKGE
Ga0315907_1001368019F093528AGGMAEDTITHVITLVVQAGQKWNKVELFDFSGGEPTPLAAGEGSNWRTALGEALSKISLSSDTPAVEKTINDIIKENVEGQGENE
Ga0315907_1001368021F095162GGAMTDEKRMASAAKAAVYYRNYRRARDRALIKLSHLHPEDYKELLEKEKVSDEQEGKTWIDINGNTIEPIIGTRTKARGTTFTQADTNQGNDGGKA
Ga0315907_1001368023F013279AGGCGGMQYDYRCPECNGEITIERSIHEDPRDPSCFVCHISMIRKWDSPGVTFKGKGFYSTGG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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