NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10016040

Scaffold Ga0315907_10016040


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10016040 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7104
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009003Metagenome / Metatranscriptome324Y
F053068Metagenome141Y
F062477Metagenome130Y
F069698Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001604013F069698N/AMDFQPRDLVTIIGGAVSLTGLYYALKRDVVKVSASLKTVESYHKREVTMLAESIKDTKEEFNNKLTAMKDEQNKAIDKLESKIDTIATQNILISNNLAELTGYLRGQK
Ga0315907_1001604014F062477N/AQRSESRTRYSRRDFTPELTTYDQQLFNLNYNSMMYWYNTTKELDSLYQMEKLKTHYYAKITGIQAASYETLATIYENKQSIESAVNAEKDNQIKDLKRRNRRLIISNTMLTVGITAVAFSTIYFTIL
Ga0315907_100160407F009003AGGMKAKDKAWQLYSNYFDLVEGEKQEGNLVDVHVKALNCAILCVDEAISNAPNDILNDFESTGEFYSVKAYYHHVKNELLKLNVQKKVTTP
Ga0315907_100160409F053068N/AMTQEKKETAMRRLHLALKKRFKGQAIRMTWAEMEGFLNAAQTIEMNHILNAYNDGYKDGESGQPNRTQIEP
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