NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10020715

Scaffold Ga0315907_10020715


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10020715 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6107
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010247Metagenome / Metatranscriptome306Y
F020539Metagenome / Metatranscriptome223Y
F085365Metagenome / Metatranscriptome111N
F091614Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100207151F085365N/AENNFYSKENSMLDYKSIKEYWSKFYADAFEDVKNFWKDYAKAVEQFYSKK
Ga0315907_1002071513F010247AGGAGMNVQGVVKYVYDNRLTKDGTPNRFPNFKFKVNDQEIVLWSAIKPAFLEKGSKVSVAVQASKKNGSLFVQTKPDKTPIIQQLPNDSEPKPDTSFNVDDFEADNFNTAVNTIQKEIENAPVTKTFNKDEYMFVMALLKSAIESGKIDVTKEEIDLKIKDFKFLFQMNFHN
Ga0315907_1002071515F091614AGGAMETKHDIINRLASNLRYLRINTKIEQPMSGKMKYMSQKDLAEMMGIGCEQQVSKFELATNQMSASQVYKVAKIFDVTVDSLFGDLTKSDYKKVIKFDIYA
Ga0315907_100207152F020539N/AMARTTNEELISLRGHITGIKREVKVLGTSVYKLEKQMTSLYWAILCGLGALSLALITIFLAK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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