NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10020863

Scaffold Ga0315907_10020863


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10020863 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6081
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007363Metagenome / Metatranscriptome352Y
F013526Metagenome / Metatranscriptome270Y
F015730Metagenome / Metatranscriptome252Y
F017484Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1002086310F017484N/AMSIEIFRLNENGAGWVDIEDATTAELLDLELAIVTKAEVKMLCFKCHVEIPRGNVCVNHKNVRGGIYLD
Ga0315907_1002086311F013526AGGAGGLTKKNVLISFVTDADTDLQAVFNLNKIMQKLSDDELEKFNAFEVLDVE
Ga0315907_1002086313F015730AGGAGMLSQNTLDKIVYEYQHGGVKNYHPEISMSERKALLKYLFSLPTYCSCCVKG
Ga0315907_1002086320F007363AGGAMRGYSIVDLLVDQYYAPTSLRRRFNGGIINFAEKREDTYPPEGWEHFAIRYRPTGSFKDEWATVAVRVSDY
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