NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10030793

Scaffold Ga0315907_10030793


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10030793 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4849
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019105Metagenome231Y
F025467Metagenome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100307931F025467N/ANLSLLFQIALGVMCVVLIMREPKQVYPVSNQKTIETRIQGKETVIKQQGKVIDNSKVIIDELNHGLYDLQAELEKVKNSRDTFKITQIQDTMIHVLYRRDKEKDAIISAQDTIIVAQRYIINSQDTIITSQAFDIKKLKRQRNISLLLNGILTTGLIIK
Ga0315907_100307935F019105N/AMKKKLLIVGLGFVALVCIQIFSSGHEHVVVVEDNVQLTGENKKLTTANKRLTNSVNKLEAEKEELIEDKENLQEMVSEVIGDLDSTRSVVKDIKKELANEKDIVRKQSTGKQFEFQPITLPTSDGD
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