NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10044806

Scaffold Ga0315907_10044806


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10044806 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3914
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009945Metagenome310Y
F016922Metagenome243Y
F026794Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1004480611F009945GAGMSTALATFKRENSVATHRLAGAGHRYPWMAFFATITMKDGTRRPFTELAHEYSMVDLMRRNKVADADTELEACQFLAERNAIPWPADEPKKRKSKP
Ga0315907_100448064F016922AGGAGGMSNPIRISSRAIQCRADSDGATEYAIRRNGRDFLVTAHSRMEADIAAEYYRPDEPDAAQPELLP
Ga0315907_100448068F026794AGGAGGMMHSGDWPNSISERDLRVTASQQRHDENDAREATRGEVTFDELDRRYADPISLEEAVALRPFFEAFCEGRTVWAYELKERYGRPTPTWTPITEWDGHFRRECLSLTYRTDNPFATE
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